Hot Paper in Plant & Animal Science

June 2014

 “Nuclear ribosomal internal transcribed spacer (ITS) region as a universal barcode marker for Fungi,” by Conrad L. Schoch, et al., Proceedings of the National Academy of Sciences of the United States of America, 109(16): 6241-6, 17 April 2012.  

[Authors' affiliations: NIH, NCBI, Bethesda, MD; Agr. & Agri. Food Canada, Ottawa; Field Museum, Chicago, IL; Cent. Bur. Schimmelcultures Fungal Biodivers. Cent., Utrecht, Netherlands]

Abstract: “Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes large introns, and can be insufficiently variable. Three subunits from the nuclear ribosomal RNA cistron were compared together with regions of three representative protein-coding genes (largest subunit of RNA polymerase II, second largest subunit of RNA polymerase II, and minichromosome maintenance protein). Although the protein-coding gene regions often had a higher percent of correct identification compared with ribosomal markers, low PCR amplification and sequencing success eliminated them as candidates for a universal fungal barcode. Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter-and intraspecific variation. The nuclear ribosomal large subunit, a popular phylogenetic marker in certain groups, had superior species resolution in some taxonomic groups, such as the early diverging lineages and the ascomycete yeasts, but was otherwise slightly inferior to the ITS. The nuclear ribosomal small subunit has poor species-level resolution in fungi. ITS will be formally proposed for adoption as the primary fungal barcode marker to the Consortium for the Barcode of Life, with the possibility that supplementary barcodes may be developed for particular narrowly circumscribed taxonomic groups.”

 

This 2012 report from PNAS was cited 25 times in current journal articles indexed by Thomson Reuters during January-February 2014. No other paper indexed in the last two years in the main field of Plant & Animal Science, aside from reviews, attracted a higher number of citations during that two-month period. Prior to the most recent bimonthly tally, citations to the report have accrued as follows, as tracked by Essential Science Indicators Hot Papers:

 

November-December 2013: 26 citations
September-October 2013: 33
July-August 2013: 26
May-June 2013: 23
March-April 2013: 19
January-February 2013: 23
November-December 2012: 16
September-October 2012: 11
July-August 2012: 6
May-June 2012: 3

Total citations to date: 211

 

SOURCE: Thomson Reuters Web of Science

The data and citation records included in this report are from Thomson Reuters Web of ScienceTM. Web of ScienceTM is a registered trademark of Thomson Reuters. All rights reserved.