ARABIDOPSIS THALIANA DNA METHYLATION

SPECIAL TOPICS

Epigenetics - March 2009

Research Front Maps

Research front maps are diagrammatic representations of the core papers comprising each front. They are selected from the current Research Front set that are relevant to the featured special topic. The title for this Research Front Map is "ARABIDOPSIS THALIANA DNA METHYLATION," containing 12 core papers. Source dates: 1998-December 31, 2008 (sixth bimonthly period 2008).

Each circle represents a highly cited paper whose bibliographic information is displayed when the user clicks on the circle. The solid lines between circles represent the strongest co-citation links for each paper (that is, indicating that the papers are frequently cited together); weaker links are indicated by dashed lines. Papers close to each other on the map are generally more highly co-cited. The most recent paper(s) are indicated in pink. Annotations may have been added to this map which represent the main research themes. These appear as labels attached to specific regions on the maps.

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Core Papers

Label: Zhang-2006
Title: Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
Journal: CELL, 126 (6): 1189-1201 SEP 22 2006
Citations: 125
Authors: Zhang, XY;Yazaki, J;Sundaresan, A;Cokus, S;Chan, SWL;Chen, HM;Henderson, IR;Shinn, P;Pellegrini, M;Jacobsen, SE;Ecker, JR
Addresses:
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Univ Calif Los Angeles, Howard Hughes Med Inst, Los Angeles, CA 90095 USA
Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA
Salk Inst Biol Studies, Genom Anal Lab, La Jolla, CA 92037 USA

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Label: Gehring-2006
Title: DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation
Journal: CELL, 124 (3): 495-506 FEB 10 2006
Citations: 85
Authors: Gehring, M;Huh, JH;Hsieh, TF;Penterman, J;Choi, Y;Harada, JJ;Goldberg, RB;Fischer, RL
Addresses:
Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
Univ Calif Davis, Div Biol Sci, Plant Biol Sect, Davis, CA 95616 USA
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA

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Label: Zilberman-2007
Title: Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
Journal: NAT GENET, 39 (1): 61-69 JAN 2007
Citations: 81
Authors: Zilberman, D;Gehring, M;Tran, RK;Ballinger, T;Henikoff, S
Addresses:
Fred Hutchinson Canc Res Ctr, 1100 Fairview Ave N, Seattle, WA 98109 USA
Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA

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Label: Henderson-2007
Title: Epigenetic inheritance in plants
Journal: NATURE, 447 (7143): 418-424 MAY 24 2007
Citations: 41
Authors: Henderson, IR;Jacobsen, SE
Addresses:
Univ Calif Los Angeles, Howard Hughes Med Inst, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Univ Calif Los Angeles, Howard Hughes Med Inst, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA

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Label: Jullien-2006
Title: Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting
Journal: PLANT CELL, 18 (6): 1360-1372 JUN 2006
Citations: 40
Authors: Jullien, PE;Kinoshita, T;Ohad, N;Berger, F
Addresses:
Natl Univ Singapore, Temasek Lifesci Lab, Chromatin & Reprod Grp, Singapore 117604, Singapore
Natl Univ Singapore, Temasek Lifesci Lab, Chromatin & Reprod Grp, Singapore 117604, Singapore
Natl Inst Genet, Mishima, Shizuoka 4118540, Japan
Tel Aviv Univ, Fac Life Sci, Dept Plant Sci, IL-69978 Tel Aviv, Israel

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Label: Zhu-2007
Title: The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis
Journal: CURR BIOL, 17 (1): 54-59 JAN 9 2007
Citations: 26
Authors: Zhu, JH;Kapoor, A;Sridhar, VV;Agius, F;Zhu, JK
Addresses:
Univ Calif Riverside, Ctr Plant Cell Biol, Inst Integrat Genome Biol, Riverside, CA 92521 USA
Univ Calif Riverside, Ctr Plant Cell Biol, Inst Integrat Genome Biol, Riverside, CA 92521 USA
Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA

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Label: Penterman-2007
Title: DNA demethylation in the Arabidopsis genome
Journal: PROC NAT ACAD SCI USA, 104 (16): 6752-6757 APR 17 2007
Citations: 25
Authors: Penterman, J;Zilberman, D;Huh, JH;Ballinger, T;Henikoff, S;Fischer, RL
Addresses:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
Univ Calif Berkeley, Dept Plant & Microbial Sci, Berkeley, CA 94720 USA

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Label: Zhang-2007
Title: Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
Journal: PLOS BIOL, 5 (5): art. no.-e129 MAY 2007
Citations: 24
Authors: Zhang, XY;Clarenz, O;Cokus, S;Bernatavichute, YV;Pellegrini, M;Goodrich, J;Jacobsen, SE
Addresses:
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90024 USA
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90024 USA
Univ Edinburgh, Inst Mol Plant Sci, Edinburgh EH8 9YL, Midlothian, Scotland
Univ Edinburgh, Sch Biol, Edinburgh EH8 9YL, Midlothian, Scotland
Univ Calif Los Angeles, Inst Mol Biol, Los Angeles, CA 90024 USA
Univ Calif Los Angeles, Howard Hughes Med Inst, Los Angeles, CA 90024 USA

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Label: Xiao-2006
Title: DNA methylation is critical for Arabidopsis embryogenesis and seed viability
Journal: PLANT CELL, 18 (4): 805-814 APR 2006
Citations: 22
Authors: Xiao, WY;Custard, KD;Brown, RC;Lemmon, BE;Harada, JJ;Goldberg, RB;Fischer, RL
Addresses:
Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
Univ Louisiana, Dept Biol, Lafayette, LA 70504 USA
Univ Calif Davis, Div Biol Sci, Plant Biol Sect, Davis, CA 95616 USA
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA

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Label: Kinoshita-2007
Title: Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats
Journal: PLANT J, 49 (1): 38-45 JAN 2007
Citations: 19
Authors: Kinoshita, Y;Saze, H;Kinoshita, T;Miura, A;Soppe, WJJ;Koornneef, M;Kakutani, T
Addresses:
Natl Inst Genet, Dept Integrated Genet, Yata 1111, Mishima, Shizuoka 4118540, Japan
Natl Inst Genet, Dept Integrated Genet, Mishima, Shizuoka 4118540, Japan
Max Planck Inst Zuchtungsforsch, D-5000 Cologne, Germany

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Label: March-Diaz-2007
Title: SEF, a new protein required for flowering repression in Arabidopsis, interacts with PIE1 and ARP6
Journal: PLANT PHYSIOL, 143 (2): 893-901 FEB 2007
Citations: 13
Authors: March-Diaz, R;Garcia-Dominguez, M;Florencio, FJ;Reyes, JC
Addresses:
Univ Seville, CSIC, Inst Bioquim Vegetal & Fotosintesis, E-41092 Seville, Spain
Univ Seville, CSIC, Inst Bioquim Vegetal & Fotosintesis, E-41092 Seville, Spain
Ctr Andaluz Biol Mol & Med Regenerat, E-41092 Seville, Spain

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Label: Penterman-2007
Title: Genetic interactions between DNA demethylation and methylation in Arabidopsis([OA])
Journal: PLANT PHYSIOL, 145 (4): 1549-1557 DEC 2007
Citations: 6
Authors: Penterman, J;Uzawa, R;Fischer, RL
Addresses:
Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

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KEYWORDS: ARABIDOPSIS THALIANA DNA METHYLATION UNCOVERS; PRUNING DNA METHYLATION PATTERNS; DNA DEMETHYLATION; DEMETER DNA GLYCOSYLASE ESTABLISHES MEDEA POLYCOMB GENE SELF-IMPRINTING; DNA GLYCOSYLASE/LYASE ROS1 FUNCTIONS.
[FRONT 7784: (2002-2008_6) (MOL; ST: Epigenetics)]

Special Topics : Epigenetics : ARABIDOPSIS THALIANA DNA METHYLATION - Epigenetics